This story originally appeared in UCLA Today, a discontinued publication.

10 questions: Conservation prof on a fascinating extinction

Brad Shaffer
Amphibian expert Brad Shaffer is watching a battle for survival between the endangered California-native tiger salamander and its larger, non-native "cousin," brought in in the 1950s from Texas.
Earthquakes. Fires. Drought. Mountain lions. Killer bees. El Chupacabra, the mythical goat-sucking vampire. Waterdogs.
California is prey to a multitude of disaster scenarios, both real and imagined. UCLA professor and amphibian expert Brad Shaffer is fascinated by the ecological havoc wreaked by waterdogs. The story starts in the 1950s when a couple of enterprising bait dealers from the Salinas Valley realized they could find bigger bait in the form of larger salamanders in Texas than in California. They retrofitted the bed of a pickup truck with a mini-swimming pool and headed off to Texas and New Mexico for a salamander roundup. The waterdogs, as they were nicknamed, produced twice as much bait for the buck.
Today, the non-native barred tiger salamander is helping to push the California tiger salamander toward extinction, said Shaffer, a professor at UCLA’s Institute of the Environment and Sustainability. There are many reasons the native salamander is in trouble, but one of the most intriguing is that the two species interbreed, and the hybrid salamanders energetically out-compete the natives.
This is bad news for the California’s native landscape, but fascinating for scientists, especially since that human evolution went through much the same process, according to analysis of gene mapping by the Max Planck Institute for Evolutionary Anthropology in Leipzig, Germany. Just recently, the New York Times ran an article about research showing that early humans and Neanderthals interbred more than 40,000 years ago, and natural selection favored the hybrids with improved genetic immunity to disease. Thanks to Shaffer’s research at UC Natural Reserve System sites, we now have a chance to see that process in real time in the endangered tiger salamander.
Shaffer is a rare breed himself, a scientist who is as comfortable working with business leaders, politicians, activists and citizens on conservation policy questions as he is in the laboratory untangling amphibian genetics. Shaffer recently left UC Davis to become a professor in the Institute of the Environment and Sustainability and in the Department of Ecology and Evolutionary Biology. He is also director of UCLA’s La Kretz Center for California Conservation Science, which forges connections between state-of-the-art science and scientists with the people who make crucial decisions about California nature. He joined Susan Suleiman from the UC’s Office of the President for this Q-and-A.
You recently left UC Davis after 25 years. What did you leave behind, in terms of the work you do?
We run a project at the Jepson Prairie Preserve in the Sacramento Valley, one of the UC Natural Reserve System sites. Our study is a very detailed, 10-year study of the California tiger salamander, which is an endangered species. We’re in year nine.
So the location was important.
It utilizes the vernal pool the salamanders breed in. Vernal pools are ephemeral, and increasingly rare in California. The vernal pool at Jepson, Olcott Lake, may be the largest vernal pool left in the Central Valley. It’s enormous, about 80 acres when it fills up.
So researchers have to run out to Jepson whenever it rains?
That’s not the only challenge when it comes to this salamander. They spend all but a handful of the days and nights of the year underground in gopher burrows, so you don’t know where they are. When it rains, they march up to ponds and breed, then march back down again. It’s really a trick to find out where they are and how much land you need to protect to keep a healthy population of salamanders.
Are you conflicted about the threat posed by interbreeding with the introduced species? Scientifically, it's very interesting, yet it's a significant threat to the native species.
That’s exactly right. The story fascinated me. In the 1920s, 1930s and 1940s, essentially all the rivers in California were dammed and all these fish from the eastern U.S. were introduced, creating a sportfishing industry that is 100 percent based on non-native fishes in reservoirs and non-natural bodies of water.
And the non-native fish are joined by non-native salamanders. What’s the difference between the salamanders?
California tiger salamanders had larvae and those larvae were used as bait, but the California salamanders metamorphose and turn into the terrestrial form when they’re only about 5 inches long, while salamanders from other places get huge, a foot long.
So it was obvious to introduce those non-native salamanders as bait?
Fifty years ago, yes. I actually found one of the guys who transplanted the non-natives from Texas and New Mexico. Took him out to lunch, we chatted about it. He wasn’t doing anything illegal at the time.
What about it interests you scientifically?
This hybridization phenomenon is fascinating. You take two species; they’ve been separated for 5 million years. Do a massive transplantation experiment and see what happens. Today, after 50 or 60 years, we have the ability to look at individual genes and the genome, and see if there are parts of the native genome that outperform the non-native one and vice versa.
Are we learning anything new about speciation from the unfortunate-sounding marriage?
One of the fascinating things from a scientific perspective is that it’s really in its early stages. We’re talking about 20 or 30 generations of salamanders. Some of the genes that are coming in from the non-native species are extraordinarily favored by natural selection. Within a couple of generations they replace the native genes. I never would have predicted that, because the California tiger salamanders evolved here. Why in the world would these non-native genes be so much more fit?
We have 68 genes that we’ve studied closely. Three of the non-natives trounce the native genes. They take over more quickly and they move more rapidly across the landscape, and the three genes together act as a unit. We have evidence suggesting that if a salamander has these non-native genes, they grow more quickly, they metamorphose at a much bigger size, and that probably means they can walk faster and move across the landscape more quickly.
A salamander super race?
Exactly. The only reason we can understand it in this case is that we’re watching it happen in real time. If these genes had spread across the native species you’d just think it was something that evolved here, in the native species. You need pure populations to compare to the hybrid. This hybridization event is very recent, but it’s old enough so that these dynamics are happening.
Great science, but not so great for the native salamander.
We’re working closely with the U.S. Fish and Wildlife Service and the California Department of Fish and Game to find ways to incentivize landowners to modify their land to favor the native salamander. From a conservation point of view it’s a horrible problem, but from a biological point of view it’s fascinating. We’ve invested a lot in studying it from both points of view. 
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